PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B9DD3E76F.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 371aa    MW: 39922.8 Da    PI: 7.0945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B9DD3E76F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31192250259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+
  Traes_5BL_B9DD3E76F.1 192 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRSDPNMLVITYTAEHNHP 250
                            699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.315186252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-30189252IPR003657WRKY domain
SuperFamilySSF1182902.75E-26190252IPR003657WRKY domain
SMARTSM007748.6E-38191251IPR003657WRKY domain
PfamPF031062.1E-25193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDMEEQANAA ATAAREGDLA DVVARANSMP YSAGARRQAP PPPPPSAAAR VMIPYEEERQ  60
RRPANVACGG GGGQVTFEAP PSTVVVDPYL LAAAGGYGLP QQQQHQHQQL LAFQISEHAC  120
CAAADSDDPM RISPPPPPPP PAPHHQMITS YCGMACTHIP YCRKNDVRKV VCIPAPPVMS  180
NRAGGGGEVI PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE RSRSDPNMLV  240
ITYTAEHNHP WPMQRNVLAG YARAHTHAAA KKQQKISSSS SADNAASSSS SNSFHVEQIN  300
PICGDQLPVS CKMPDSTATA GDGGGLLFEG IQPDEVFAEL EELETDNNPM MTSANVYGSR  360
GVSSNYEWHK F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-171902521677Probable WRKY transcription factor 4
2ayd_A9e-171902521374WRKY transcription factor 1
2lex_A8e-171902521677Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752000.18e-97PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA801e-55WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLW5FH450.0W5FH45_WHEAT; Uncharacterized protein
STRINGMLOC_58349.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-53WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]